Package: motmot 2.1.3

motmot: Models of Trait Macroevolution on Trees

Functions for fitting models of trait evolution on phylogenies for continuous traits. The majority of functions described in Thomas and Freckleton (2012) <doi:10.1111/j.2041-210X.2011.00132.x> and include functions that allow for tests of variation in the rates of trait evolution.

Authors:Mark Puttick [aut, cre, cph], Gavin Thomas [aut, cph], Rob Freckleton [aut, cph], Magnus Clarke [ctb], Travis Ingram [ctb], David Orme [ctb], Emmanuel Paradis [ctb]

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motmot.pdf |motmot.html✨
motmot/json (API)

Peer review:

Bug tracker:https://github.com/puttickmacroevolution/motmot/issues

On CRAN:

34 exports 4 stars 2.35 score 18 dependencies 8 mentions 34 scripts 214 downloads

Last updated 4 years agofrom:59299172fb. Checks:OK: 1 ERROR: 8. Indexed: yes.

Exports:addFossilToPhyas.rateDataas.rateMatrixcalcCutOffchr.disp.lrtchr.disp.paramchr.disp.simcontemporaryPhydropTipPartialfairProportionslikRatePhylolikTraitPhylomcmc.plotML.RatePhylonode.descendentsnodeTimesoptim.likRatePhylophyloCovarphyloMeanphyloVarpic.pglsplot.timeSlice.MLplot.traitMedusa.modelRatePhylo.allCIsampleShidsortTraitDatasummary.traitMedusatraitData.plottransformPhylotransformPhylo.lltransformPhylo.MCMCtransformPhylo.MLtransformPhylo.simtransformRateMatrix

Dependencies:apecapercodadigestFNNkernlabKernSmoothkslatticeMASSMatrixmclustmgcvmulticoolmvtnormnlmepracmaRcpp